at.jku.risc.stout.urauc.algo

Class AlignFncLAA

java.lang.Object

at.jku.risc.stout.urauc.algo.AlignFnc

at.jku.risc.stout.urauc.algo.AlignFncLAA

public class AlignFncLAA
extends AlignFnc

Implementation of an alignment computation function with longest subsequence.
This implementation combines the common subsequence generator and the admissibility test. It generates all the admissible alignments of two given sequences of a certain length.

Author:

Alexander Baumgartner

See Also:

AlignFnc

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	AlignFncLAA.AlignmentIter

Nested classes/interfaces inherited from class at.jku.risc.stout.urauc.algo.AlignFnc

AlignFnc.AlignmentIterator

Field Summary

Fields inherited from class at.jku.risc.stout.urauc.algo.AlignFnc

debugLevel

Constructor Summary

Constructors

Constructor and Description
AlignFncLAA()

Method Summary

Methods

Modifier and Type	Method and Description
AlignFnc.AlignmentIterator	getIterator(AntiUnifyProblem aup, int minAlignLen, int upperBound, boolean iterateAll, PrintStream out) Initialize the computation.
AlignFnc	newInstance() Returns a fresh new instance of this alignment computation function.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AlignFncLAA

public AlignFncLAA()

Method Detail

getIterator

public AlignFnc.AlignmentIterator getIterator(AntiUnifyProblem aup,
                                     int minAlignLen,
                                     int upperBound,
                                     boolean iterateAll,
                                     PrintStream out)
                                       throws MaximumIterationException

Description copied from class: AlignFnc

Initialize the computation. This method is called once before the iterations begin. For each pair, the user has to iterate over the alignment computation function AlignFnc and for each iteration the anti-unification algorithm should be called.

Specified by:

getIterator in class AlignFnc

Throws:

MaximumIterationException - If the specified upper bound has been reached. Any value smaller than 1 disables the upper bound.

newInstance

public AlignFnc newInstance()

Description copied from class: AlignFnc

Returns a fresh new instance of this alignment computation function.

Specified by:

newInstance in class AlignFnc